miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus pinaster



ABOUT THIS RECORD

ID: MNEST002031
species: Pinus pinaster
miRNA family: MIR1314
source: miRNEST

Taxonomy by NCBI:
Pinus pinaster Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGCCTTGAATGTTAGGAGAA

miRNA*
CTTCAACATTAGAGGCCAATA

mismatches: 2
bulges: 1

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pre-miRNA
CTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATCATATTCTTATTCTTAATCGGCCTTGAATGTTAGGAGAATGTTTTCC

dot-bracket secondary structure
..(((((.(((((((((((((.((((((.((..(((((.........)))))..)).)))))).)))))).))))))).))))).


SIMILARITIES
miRBase pta-MIR1314: 2e-38

PMRD pta-miR1314: 2e-38

microPC miR1314: 6e-33
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR1314 from microPC (MNEST046760)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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